The skill SKILL.md files are hardlinked across .agents/skills/ and
.claude/skills/ (same inode, two paths), but git had committed divergent
blobs: the .agents/ copies carried an "Extended reference: AGENTS.md"
note that the .claude/ copies lacked. Because one physical file cannot
match two different blobs, the working tree was permanently dirty on the
three .claude/skills paths.
Stage the .claude copies so both paths commit identical content (with the
AGENTS.md reference note, the fuller intended version). Restores a clean
git status and keeps it clean across checkouts.
Affected skills: flux-best-practices, vercel-composition-patterns,
vercel-react-best-practices.
calesthio